Interaction of naphthalene derivatives with lipids in membranes studied by the 1H-nuclear Overhauser effect and molecular dynamics simulation

Literature Information

Publication Date 2012-09-17
DOI 10.1039/C2CP41984J
Impact Factor 3.676
Authors

Megumi Shintani, Yushi Matsuo, Shun Sakuraba


View Original

Abstract

The location, orientation, and dynamics of hydrophobic small molecules in lipid membranes are studied through combined use of solution-state 1H-NMR and MD simulation. 1-Naphthol and 1-methylnaphthalene were adopted as the small molecules with or without hydrophilic groups. The nuclear Overhauser effect (NOE) measurement was performed for large unilamellar vesicles (100 nm in diameter) composed of dimyristoylphosphatidylcholine (DMPC) and the naphthalene derivative. The transient NOE-SE (spin–echo) scheme previously reported (J. Phys. Chem. B, 2011, 115, 9106–9115) was employed to quantitatively determine the NOE cross relaxation rate constant between DMPC and the naphthalene derivative. The observed NOE shows that both the naphthalene derivatives distribute over a wide domain across the normal of the essentially planar membrane ranging from the hydrophobic core to the hydrophilic headgroup. The experimental NOE information was further refined in combination with the analysis of time correlation functions in MD simulation. It was found that 1-naphthol exhibits a slight preference for pointing its OH group toward the hydrophilic domain of the membrane and that no definite preference can be concluded for the orientation of 1-methylnaphthalene. When 1-naphthol and 1-methylnaphthalene are compared, the NOE is stronger for 1-naphthol due to the restricted motion of the OH group. The slowdown of the 1-naphthol motion is also evidenced by the 1H spectral line width.

Related Literature

Reaction rate of a composite core–shell nanoreactor with multiple nanocatalysts

Duccio Fanelli, Stefano Angioletti-Uberti

2016-07-05 Paper

DOI: 10.1039/C6CP01179A

TEMPO-mediated oxidized winter melon-based carbonaceous aerogel as an ultralight 3D support for enhanced photodegradation of organic pollutants

Miao Miao, Gangling Wang, Shaomei Cao, Xin Feng, Jianhui Fang, Liyi Shi

2015-08-27 Paper

DOI: 10.1039/C5CP04679C

Flexible Ag–C60 nano-biosensors based on surface plasmon coupled emission for clinical and forensic applications

Pradyumna Mulpur, Sairam Yadavilli, Praharsha Mulpur, Neeharika Kondiparthi, Venkataramaniah Kamisetti

2015-09-08 Paper

DOI: 10.1039/C5CP04268B

Interaction of l-alanyl-l-valine and l-valyl-l-alanine with organic vapors: thermal stability of clathrates, sorption capacity and the change in the morphology of dipeptide films

Marat A. Ziganshin, Nadezhda S. Gubina, Alexander V. Gerasimov, Valery V. Gorbatchuk, Sufia A. Ziganshina, Anton P. Chuklanov, Anastas A. Bukharaev

2015-07-08 Paper

DOI: 10.1039/C5CP03309H

Double deuterated acetylacetone in neon matrices: infrared spectroscopy, photoreactivity and the tunneling process

Michèle Chevalier, Claudine Crépin

2016-06-27 Paper

DOI: 10.1039/C6CP02796B

Unravelling the optical responses of nanoplasmonic mirror-on-mirror metamaterials

Debabrata Sikdar, Shakeeb B. Hasan, Michael Urbakh, Joshua B. Edel, Alexei A. Kornyshev

2016-07-05 Paper

DOI: 10.1039/C6CP04551K

Strong solvent dependence of linear and non-linear optical properties of donor–acceptor type pyrrolo[3,2-b]pyrroles

Rafał Orłowski, Marzena Banasiewicz, Guillaume Clermont, Frédéric Castet, Rashid Nazir, Mireille Blanchard-Desce, Daniel T. Gryko

2015-07-08 Paper

DOI: 10.1039/C5CP03523F

Synthesis of barbituric acid containing nucleotides and their implications for the origin of primitive informational polymers

Chaitanya V. Mungi, Sachin Kumar Singh, Sudha Rajamani

2016-04-12 Paper

DOI: 10.1039/C6CP00686H

You might also like

Compound Q&A

What precautions should be taken when handling 4-Methyl-6-(trifluoromethyl)quinoline (CAS: 40716-16-3)?

When handling 4-Methyl-6-(trifluoromethyl)quinoline (CAS: 40716-16-3), safety go...

40716-16-34-Methyl-6-(trifluor...
Compound Q&A

What is 4-(3,5-Difluorophenyl)aniline (CAS: 405058-00-6)?

4-(3,5-Difluorophenyl)aniline is an aromatic organic compound with the CAS numbe...

405058-00-64-(3,5-Difluoropheny...
Compound Q&A

How is 5-{[4-(Trifluoromethyl)phenyl]sulfanyl}-1,2,3-thiadiazole-4-carboxylic acid (CAS: 338982-07-3) typically synthesized?

5-{[4-(Trifluoromethyl)phenyl]sulfanyl}-1,2,3-thiadiazole-4-carboxylic acid can ...

338982-07-35-{[4-(Trifluorometh...
Compound Q&A

What is the market or research trend for 4-Benzylaniline hydrochloride (CAS: 6317-57-3)?

The market for 4-Benzylaniline hydrochloride (CAS: 6317-57-3) is steadily growin...

6317-57-34-Benzylaniline hydr...
Compound Q&A

Is [3-(Diethylsulfamoyl)phenyl]boronic acid (CAS: 871329-58-7) safe?

[3-(Diethylsulfamoyl)phenyl]boronic acid is generally considered safe when handl...

871329-58-7[3-(Diethylsulfamoyl...
Compound Q&A

What are the main uses of 3-Bromo-2,5-dimethoxyaniline (CAS: 115929-62-9)?

3-Bromo-2,5-dimethoxyaniline is mainly used in the pharmaceutical and chemical i...

115929-62-93-Bromo-2,5-dimethox...
Compound Q&A

What regulatory guidelines apply to N-Methyl-1-(5-methyl-1H-indol-3-yl)methanamine (CAS: 915922-67-7)?

N-Methyl-1-(5-methyl-1H-indol-3-yl)methanamine (CAS: 915922-67-7) is subject to ...

915922-67-7N-Methyl-1-(5-methyl...
Compound Q&A

What industries use Carbamic acid, N-[(5S)-5,6-diamino-6-oxohexyl]-, 1,1-dimethylethyl ester (CAS: 24828-96-4)?

This compound is primarily used in the pharmaceutical industry for the synthesis...

24828-96-4Carbamic acid, N-[(5...
Compound Q&A

How should 2-Methyl-2-propanyl [(1S,3R)-3-aminocyclohexyl]carbamate (CAS: 1298101-47-9) be stored?

2-Methyl-2-propanyl [(1S,3R)-3-aminocyclohexyl]carbamate (CAS: 1298101-47-9) sho...

1298101-47-92-Methyl-2-propanyl ...
Compound Q&A

What industries use Ethyl 2-bromo-4,4,4-trifluorobutanoate (CAS: 367-33-9)?

Ethyl 2-bromo-4,4,4-trifluorobutanoate (CAS: 367-33-9) is utilized in the pharma...

367-33-9Ethyl 2-bromo-4,4,4-...

Source Journal

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
Self-citation Rate: 10.3%
Articles per Year: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

Recommended Compounds

Recommended Suppliers

Disclaimer
This page provides academic journal information for reference and research purposes only. We are not affiliated with any journal publishers and do not handle publication submissions. For publication-related inquiries, please contact the respective journal publishers directly.
If you notice any inaccuracies in the information displayed, please contact us at support@chemtradehub.com. We will promptly review and address your concerns.