Computational studies of 13C NMR chemical shifts of saccharides

Literature Information

Publication Date 2005-06-09
DOI 10.1039/B505546F
Impact Factor 3.676
Authors


View Original

Abstract

The 13C NMR chemical shifts for α-D-lyxofuranose, α-D-lyxopyranose 1C4, α-D-lyxopyranose 4C1, α-D-glucopyranose 4C1, and α-D-glucofuranose have been studied at ab initio and density-functional theory levels using TZVP quality basis set. The methods were tested by calculating the nuclear magnetic shieldings for tetramethylsilane (TMS) at different levels of theory using large basis sets. Test calculations on the monosaccharides showed B3LYP(TZVP) and BP86(TZVP) to be cost-efficient levels of theory for calculation of NMR chemical shifts of carbohydrates. The accuracy of the molecular structures and chemical shifts calculated at the B3LYP(TZVP) level is comparable to those obtained at the MP2(TZVP) level. Solvent effects were considered by surrounding the saccharides by water molecules and also by employing a continuum solvent model. None of the applied methods to consider solvent effects was successful. The B3LYP(TZVP) and MP2(TZVP) 13C NMR chemical shift calculations yielded without solvent and rovibrational corrections an average deviation of 5.4 ppm and 5.0 ppm between calculated and measured shifts. A closer agreement between calculated and measured chemical shifts can be obtained by using a reference compound that is structurally reminiscent of saccharides such as neat methanol. An accurate shielding reference for carbohydrates can be constructed by adding an empirical constant shift to the calculated chemical shifts, deduced from comparisons of B3LYP(TZVP) or BP86(TZVP) and measured chemical shifts of monosaccharides. The systematic deviation of about 3 ppm for O1H chemical shifts can be designed to hydrogen bonding, whereas solvent effects on the 1H NMR chemical shifts of C1H were found to be small. At the B3LYP(TZVP) level, the barrier for the torsional motion of the hydroxyl group at C6 in α-D-glucofuranose was calculated to 7.5 kcal mol−1. The torsional displacement was found to introduce large changes of up to 10 ppm to the 13C NMR chemical shifts yielding uncertainties of about ±2 ppm in the chemical shifts.

Related Literature

Toward ultrasensitive and fast colorimetric detection of indoor formaldehyde across the visible region using cetyltrimethylammonium chloride-capped bone-shaped gold nanorods as “chromophores”

Wei Duan, Ao Liu, Qing Li, Zhiwei Li, Cong-ying Wen, Zhixiong Cai, Shiming Tang, Xiyou Li

2019-06-06 Paper

DOI: 10.1039/C9AN00694J

Multivariate analysis of 3D ToF-SIMS images: method validation and application to cultured neuronal networks

C. Parmenter, D. J. Scurr, N. A. Russell

2015-11-20 Communication

DOI: 10.1039/C5AN01743B

Aptamers: versatile molecular recognition probes for cancer detection

Hongguang Sun, Weihong Tan, Youli Zu

2015-11-18 Minireview

DOI: 10.1039/C5AN01995H

Emulsion technologies for multicellular tumour spheroid radiation assays

Kay S. McMillan, Anthony G. McCluskey, Annette Sorensen, Marie Boyd, Michele Zagnoni

2015-10-05 Paper

DOI: 10.1039/C5AN01382H

Rapid bladder cancer cell detection from clinical urine samples using an ultra-thin silicone membrane

Jennie H. Appel, Hao Ren, Mandy L. Y. Sin, Joseph C. Liao, Junseok Chae

2015-11-09 Paper

DOI: 10.1039/C5AN01616A

Cancer screening via infrared spectral cytopathology (SCP): results for the upper respiratory and digestive tracts

Miloš Miljković, Benjamin Bird, Antonella I. Mazur, Jen M. Schubert, Douglas Townsend, Nora Laver, Max Almond, Oliver Old

2015-09-28 Minireview

DOI: 10.1039/C5AN01751C

Inside front cover

Cover

DOI: 10.1039/C9AN90061F

Chicken, beams, and Campylobacter: rapid differentiation of foodborne bacteria via vibrational spectroscopy and MALDI-mass spectrometry

Howbeer Muhamadali, Danielle Weaver, Abdu Subaihi, Najla AlMasoud, Drupad K. Trivedi, David I. Ellis, Dennis Linton, Royston Goodacre

2015-10-26 Paper

DOI: 10.1039/C5AN01945A

Bipolar electrode-electrochemiluminescence (ECL) biosensor based on a hybridization chain reaction

Meisheng Wu, Ning Xu, Jingtang Qiao, Jinghan Chen, Longsheng Jin

2019-06-26 Paper

DOI: 10.1039/C9AN01022J

Measurement issues associated with quantitative molecular biology analysis of complex food matrices for the detection of food fraud

Malcolm Burns, Gordon Wiseman, Angus Knight, Peter Bramley, Lucy Foster, Sophie Rollinson, Andrew Damant, Sandy Primrose

2015-11-23 Critical Review

DOI: 10.1039/C5AN01392E

You might also like

Compound Q&A

How should waste containing (6-Bromo-2-naphthyl)oxy](dimethyl)(2-methyl-2-propanyl)silane be handled?

Waste containing (6-Bromo-2-naphthyl)oxy](dimethyl)(2-methyl-2-propanyl)silane (...

100751-65-3[(6-Bromo-2-naphthyl...
Compound Q&A

How is 7-Fluoro-4-isoquinolinecarboxylic acid (CAS: 1841081-40-0) typically synthesized?

7-Fluoro-4-isoquinolinecarboxylic acid can be synthesized via a multi-step proce...

1841081-40-07-Fluoro-4-isoquinol...
Compound Q&A

What are the physical and chemical properties of 2,3,5,6-Tetrabromothieno[3,2-b]thiophene (CAS: 124638-53-5)?

2,3,5,6-Tetrabromothieno[3,2-b]thiophene is a crystalline compound with a high m...

124638-53-52,3,5,6-Tetrabromoth...
Compound Q&A

Is 1-[4-(Benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide (CAS: 1542705-92-9) safe?

1-[4-(Benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indol...

1542705-92-91-[4-(Benzylamino)-7...
Compound Q&A

What is the market or research trend for imidazo[5,1-d]-1,2,3,5-tetrazine-8-carboxylic acid, 3,4-dihydro-3-methyl-4-oxo- (CAS: 113942-30-6)?

The market for imidazo[5,1-d]-1,2,3,5-tetrazine-8-carboxylic acid, 3,4-dihydro-3...

113942-30-6Imidazo[5,1-d]-1,2,3...
Compound Q&A

What is 3-(Triisopropylsilyl)propiolaldehyde (CAS: 163271-80-5)?

3-(Triisopropylsilyl)propiolaldehyde is a synthetic organic compound with the CA...

163271-80-53-(Triisopropylsilyl...
Compound Q&A

What regulatory guidelines apply to 6-Nitro-2H-1,4-benzoxazin-3(4H)-one (CAS: 81721-87-1)?

6-Nitro-2H-1,4-benzoxazin-3(4H)-one (CAS: 81721-87-1) is subject to various regu...

81721-87-16-Nitro-2H-1,4-benzo...
Compound Q&A

How should waste containing (3-Fluorophenyl)(4-{[(2-methyl-2-propanyl)oxy]carbonyl}-1-piperazinyl)acetic acid (CAS: 885272-91-3) be handled?

Waste containing (3-Fluorophenyl)(4-{[(2-methyl-2-propanyl)oxy]carbonyl}-1-piper...

885272-91-3(3-Fluorophenyl)(4-{...
Compound Q&A

What are the physical and chemical properties of N,N'-4,4'-Biphenyldiyldiisonicotinamide (CAS: 55119-40-9)?

N,N'-4,4'-Biphenyldiyldiisonicotinamide is a white crystalline solid with a mole...

55119-40-9N,N'-4,4'-Biphenyldi...
Compound Q&A

What industries use 6-Bromo-8-fluoro-2-quinazolinol (CAS: 1036756-15-6)?

6-Bromo-8-fluoro-2-quinazolinol is primarily used in the pharmaceutical industry...

1036756-15-66-Bromo-8-fluoro-2-q...

Source Journal

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
Self-citation Rate: 10.3%
Articles per Year: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

Recommended Compounds

Recommended Suppliers

Disclaimer
This page provides academic journal information for reference and research purposes only. We are not affiliated with any journal publishers and do not handle publication submissions. For publication-related inquiries, please contact the respective journal publishers directly.
If you notice any inaccuracies in the information displayed, please contact us at support@chemtradehub.com. We will promptly review and address your concerns.