Quantum dynamics of the ππ*/nπ* decay of the epigenetic nucleobase 1,5-dimethyl-cytosine in the gas phase

Literature Information

Publication Date 2020-10-21
DOI 10.1039/D0CP04123H
Impact Factor 3.676
Authors

Martha Yaghoubi Jouybari, Yanli Liu, Roberto Improta, Fabrizio Santoro


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Abstract

We study the ultrafast dynamics of 1,5-dimethyl-cytosine, a model for 5-methyl-cytidine, after photoexcitation to the first two bright ππ* states, focusing on the possible population transfer to dark nπ* states. To that end we propagate the initial wave packets on the coupled potential energy surfaces of the seven lowest energy excited states modelled with a diabatic linear vibronic coupling (LVC) model, considering all the vibrational coordinates. Time-evolution is computed by the multilayer version of the multiconfigurational time dependent Hartree (ML-MCTDH) method. The LVC Hamiltonian is parametrized with time-dependent density functional theory (TD-DFT) calculations adopting PBE0 and CAM-B3LYP functionals, which provide a different energy gap between the lowest energy nπ* states and the spectroscopic ππ* state. Population of the lowest ππ* flows to a dark nπ* state which involves a lone pair (LP) of the carbonyl oxygen (nOπ*), but the extent of such transfer is much larger according to PBE0 than to CAM-B3LYP. Photoexcitation to the second bright state gives rise to much richer dynamics with an ultrafast (50 fs) complete decay to the lowest ππ*, to nOπ* and to another nπ* in which the excited electron comes from the LP of the ring nitrogen. We perform a detailed analysis of the vibronic dynamics both in terms of normal modes and valence coordinates (bond lengths and angles). The comparison with the analogous dynamics in 1-methyl-cytosine, a model for cytidine, provides insights into the effect of methylation at carbon 5 on the electronic and nuclear dynamics.

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DOI: 10.1039/B511668F

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DOI: 10.1039/B511383K

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Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
Self-citation Rate: 10.3%
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Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

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