Using real-valued multi-objective genetic algorithms to model molecular absorption spectra and Raman excitation profiles in solution
Literature Information
Margaret H. Hennessy, Anne Myers Kelley
The empirical modeling of the absorption spectra and resonance Raman excitation profiles of a large molecule in solution requires adjustment of a minimum of dozens of parameters to fit several hundred data points. This is a difficult optimization problem because all of the observables depend on all of the parameters in a highly coupled and nonlinear manner. Standard nonlinear least-squares fitting methods are highly susceptible to becoming trapped in local minima in the error function unless very good initial guesses for the molecular parameters are made. Here, we demonstrate a method that employs a real-valued genetic algorithm to force a broad search through parameter space to determine the best-fit parameters. The multiobjective genetic algorithm is successful at inverting absorption spectra and Raman excitation profiles to determine molecular parameters. When vibronic structure is evident in the absorption profile, the algorithm returns nearly quantitative results. For broad, featureless profiles, the algorithm returns the correct slope of the excited state surface but cannot independently determine the excited-state frequency and the equilibrium geometry change. Compared with manual adjustment of parameters to obtain a best fit, the genetic algorithm is computationally less efficient but requires less human time.
Related Literature
A facile in situ approach to fabricate N,S-TiO2/g-C3N4 nanocomposite with excellent activity for visible light induced water splitting for hydrogen evolution
K. M. Parida
DOI: 10.1039/C4CP05582A
HCN elimination from vinyl cyanide: product energy partitioning, the role of hydrogen–deuterium exchange reactions and a new pathway
Saulo A. Vázquez, Emilio Martínez-Núñez
DOI: 10.1039/C4CP05626D
Stable compositions and structures in the Na–Bi system
Xiyue Cheng, Ronghan Li, Dianzhong Li, Yiyi Li, Xing-Qiu Chen
DOI: 10.1039/C4CP05115G
Carrier mobility of MoS2 nanoribbons with edge chemical modification
Jin Xiao, Mingjun Li, Xinmei Li, Hui Xu
DOI: 10.1039/C4CP05199H
Synthesis of silicon–germanium axial nanowire heterostructures in a solvent vapor growth system using indium and tin catalysts
E. Mullane, H. Geaney, K. M. Ryan
DOI: 10.1039/C4CP04450A
Oxygen nonstoichiometry, the defect equilibrium model and thermodynamic quantities of the Ruddlesden–Popper oxide Sr3Fe2O7−δ
Yihan Ling, Fang Wang, Riyan Achmad Budiman, Takashi Nakamura, Koji Amezawa
DOI: 10.1039/C4CP05719H
Nanoparticle assembly following Langmuir–Hinshelwood kinetics on a Langmuir film and chain networks captured in LB films
Lasya Maganti, Madhuri Jash, Anju Nair, T. P. Radhakrishnan
DOI: 10.1039/C5CP00606F
Pulsed electron–electron double resonance spectroscopy between a high-spin Mn2+ ion and a nitroxide spin label
D. Akhmetzyanov, J. Plackmeyer, B. Endeward, V. Denysenkov, T. F. Prisner
DOI: 10.1039/C4CP05362A
RuO2–ReO3 composite nanofibers for efficient electrocatalytic responses
Yu Lim Kim, Hyun-A Choi, Nam-Suk Lee, Byungrak Son, Hee Jun Kim, Jeong Min Baik, Youngmi Lee, Chongmok Lee, Myung Hwa Kim
DOI: 10.1039/C4CP05615A
Revisiting Lewis dot structure weightings: a pair density perspective
David Ferro-Costas, Ricardo A. Mosquera
DOI: 10.1039/C4CP05548A
You might also like
How should waste containing 4-Bromo-3-methyl-2-thiophenecarboxylic acid (CAS: 265652-39-9) be handled?
Waste containing 4-Bromo-3-methyl-2-thiophenecarboxylic acid (CAS: 265652-39-9) ...
What industries use (2S,5S,2'S,5'S)-1,1'-(1,2-Ethanediyl)bis(2,5-dimethylphospholane) (CAS: 136779-26-5)?
(2S,5S,2'S,5'S)-1,1'-(1,2-Ethanediyl)bis(2,5-dimethylphospholane) is primarily u...
What industries use Ethyl 2-(2-bromo-5-fluorophenyl)acetate (CAS: 1214910-61-8)?
Ethyl 2-(2-bromo-5-fluorophenyl)acetate (CAS: 1214910-61-8) is used in the pharm...
How is 4-Methyl-2-benzofuran-1,3-dione (CAS: 4792-30-7) typically synthesized?
4-Methyl-2-benzofuran-1,3-dione (CAS: 4792-30-7) can be synthesized through seve...
What industries use 4,6-Dichloroquinoline-3-carbonitrile (CAS: 936498-04-3)?
4,6-Dichloroquinoline-3-carbonitrile (CAS: 936498-04-3) is used in the pharmaceu...
What are the main uses of Chloro[tris(para-trifluoromethylphenyl)phosphine]gold(I) (CAS: 385815-83-8)?
Chloro[tris(para-trifluoromethylphenyl)phosphine]gold(I) is primarily used in or...
Is 2-Bromo-5-nitrofuran (CAS: 823-73-4) safe?
2-Bromo-5-nitrofuran (CAS: 823-73-4) is generally considered safe when handled w...
How should 5-Bromo-2,3,4-trifluorobenzoic acid (CAS: 212631-85-1) be stored?
5-Bromo-2,3,4-trifluorobenzoic acid should be stored in a cool, dry place away f...
What are the main uses of Zinc bis(aminoacetate) (CAS: 7214-08-6)?
Zinc bis(aminoacetate) (CAS: 7214-08-6) is primarily used in the pharmaceutical ...
How should Adamantan-1-ylmethanol (CAS: 770-71-8) be stored?
Adamantan-1-ylmethanol should be stored in a cool, dry, and well-ventilated plac...
Source Journal
Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.











![(2S)-{[(9H-Fluoren-9-ylmethoxy)carbonyl]amino}(phenyl)acetic acid structure (2S)-{[(9H-Fluoren-9-ylmethoxy)carbonyl]amino}(phenyl)acetic acid structure](https://static.chemtradehub.com/structs/102/102410-65-1-4aa7.webp)

![(4R,5S,6S)-3-({(3S,5S)-5-[(3-Carboxyphenyl)carbamoyl]-3-pyrrolidinyl}sulfanyl)-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid structure (4R,5S,6S)-3-({(3S,5S)-5-[(3-Carboxyphenyl)carbamoyl]-3-pyrrolidinyl}sulfanyl)-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid structure](https://static.chemtradehub.com/structs/153/153832-46-3-b2e0.webp)
![(2R)-2,7,8-Trimethyl-2-[(4R,8R)-4,8,12-trimethyltridecyl]-6-chromanol structure (2R)-2,7,8-Trimethyl-2-[(4R,8R)-4,8,12-trimethyltridecyl]-6-chromanol structure](https://static.chemtradehub.com/structs/54-/54-28-4-155c.webp)