How external perturbations affect the chemoselectivity of substrate activation by cytochrome P450 OleTJE

Literature Information

Publication Date 2020-11-05
DOI 10.1039/D0CP05169A
Impact Factor 3.676
Authors

Abayomi S. Faponle


View Original

Abstract

Cytochrome P450 enzymes are versatile biocatalysts found in most forms of life. Generally, the cytochrome P450s react with dioxygen and hence are haem-based mono-oxygenases; however, in specific isozymes, H2O2 rather than O2 is used and these P450s act as peroxygenases. The P450 OleTJE is a peroxygenase that binds long to medium chain fatty acids and converts them to a range of products originating from Cα-hydroxylation, Cβ-hydroxylation, Cα–Cβ desaturation and decarboxylation of the substrate. There is still controversy regarding the details of the reaction mechanism of P450 OleTJE; how the products are formed and whether the product distributions can be influenced by external perturbations. To gain further insights into the structure and reactivity of P450 OleTJE, we set up a range of large active site model complexes as well as full enzymatic structures and did a combination of density functional theory studies and quantum mechanics/molecular mechanics calculations. In particular, the work focused on the mechanisms leading to these products under various reaction conditions. Thus, for a small cluster model, we find a highly selective Cα-hydroxylation pathway that is preferred over Cβ–H hydrogen atom abstraction by at least 10 kcal mol−1. Introduction of polar residues to the model, such as an active site protonated histidine residue or through external electric field effects, lowers the Cβ–H hydrogen atom abstraction barriers are lowered, while a full QM/MM model brings the Cα–H and Cβ–H hydrogen atom abstraction barriers within 1 kcal mol−1. Our studies; therefore, implicate that environmental effects in the second-coordination sphere can direct and guide selectivities in enzymatic reaction mechanisms.

Related Literature

Electronic communication in “chain-like” trimetallic ruthenium complexes with two C7 carbon-rich conjugated bridges

Céline Olivier, Sylvie Choua, Philippe Turek, Daniel Touchard, Stéphane Rigaut

2007-05-17 Communication

DOI: 10.1039/B704241H

Synthesis and supramolecular assembly of clicked anionic dendritic polymers into polyion complex micelles‡

Ana Sousa-Herves, Eduardo Fernandez-Megia, Ricardo Riguera

2008-05-12 Communication

DOI: 10.1039/B805208E

An expeditious one-step entry to the tetracyclic core of integrastatins

C. V. Ramana, Challa Nageswara Reddy, Rajesh G. Gonnade

2008-05-12 Communication

DOI: 10.1039/B801755G

1,3-Diindolylureas: high affinity dihydrogen phosphate receptors

Claudia Caltagirone, Philip A. Gale, Jennifer R. Hiscock, Simon J. Brooks, Michael B. Hursthouse, Mark E. Light

2008-05-29 Communication

DOI: 10.1039/B806238B

A new molybdenum-oxide-based organic–inorganic hybrid framework templated by double-Keggin anions

Yang-Guang Li, Yong-Hui Wang, Xin-Long Wang, En-Bo Wang, Zhong-Min Su, Lin Xu

2007-04-11 Communication

DOI: 10.1039/B700511C

s-Block metal complexes of a bulky, donor-functionalized allyl ligand

Sophia A. Solomon, Christopher A. Muryn, Richard A. Layfield

2008-05-12 Communication

DOI: 10.1039/B803364A

Responsive fluorinated lanthanide probes for 19F magnetic resonance spectroscopy

P. Kanthi Senanayake, Alan M. Kenwright, David Parker, Susanna K. van der Hoorn

2007-06-21 Communication

DOI: 10.1039/B705844F

Rescue of the streptomycin antibiotic activity by using streptidine as a “decoy acceptor” for the aminoglycoside-inactivating enzyme adenyl transferase

Montserrat Latorre, Pablo Peñalver, Julia Revuelta, Juan Luis Asensio, Eduardo García-Junceda, Agatha Bastida

2007-06-13 Communication

DOI: 10.1039/B704785A

Simple linear asymmetrical complexes of silver(i): NC–Ag–NH3 and Br–Ag–NH3

Ann M. Chippindale, Laura E. Head, Simon J. Hibble

2008-05-14 Communication

DOI: 10.1039/B803500H

You might also like

Compound Q&A

Are there alternatives to 1-(4-Chlorophenyl)-N-hydroxymethanimine (CAS: 3848-36-0) in synthesis?

When considering alternatives to 1-(4-Chlorophenyl)-N-hydroxymethanimine (CAS: 3...

3848-36-01-(4-Chlorophenyl)-N...
Compound Q&A

How is 3-(4-Bromophenyl)-5-(2-fluorophenyl)-1,2,4-oxadiazole (CAS: 419553-16-5) typically synthesized?

3-(4-Bromophenyl)-5-(2-fluorophenyl)-1,2,4-oxadiazole is synthesized through a m...

419553-16-53-(4-Bromophenyl)-5-...
Compound Q&A

How is 5-Chloro-2-(4-chlorophenyl)-4-methyl-6-[3-(1-piperidinyl)propoxy]pyrimidine (CAS: 1639220-19-1) typically synthesized?

5-Chloro-2-(4-chlorophenyl)-4-methyl-6-[3-(1-piperidinyl)propoxy]pyrimidine (CAS...

1639220-19-15-Chloro-2-(4-chloro...
Compound Q&A

What industries use 2-Chloro-4-(difluoromethoxy)pyridine (CAS: 1206978-15-5)?

2-Chloro-4-(difluoromethoxy)pyridine is used in the pharmaceutical industry for ...

1206978-15-52-Chloro-4-(difluoro...
Compound Q&A

What regulatory guidelines apply to 3-Chloro-6-methylpyridazine (CAS: 1121-79-5)?

3-Chloro-6-methylpyridazine (CAS: 1121-79-5) is classified under the Globally Ha...

1121-79-53-Chloro-6-methylpyr...
Compound Q&A

Are there alternatives to Methyl 4,5-dimethyl-2-nitrobenzoate in synthesis?

Several alternatives can be used in the synthesis of Methyl 4,5-dimethyl-2-nitro...

90922-74-0Methyl 4,5-dimethyl-...
Compound Q&A

Are there alternatives to (2E,2'E)-3,3'-(1,4-Phenylene)bisacrylaldehyde in synthesis?

Alternatives to (2E,2'E)-3,3'-(1,4-Phenylene)bisacrylaldehyde include other acry...

63405-68-5(2E,2'E)-3,3'-(1,4-P...
Compound Q&A

What is 3-Amino-5-chloropyridin-2-ol hydrochloride (CAS: 1261906-29-9)?

3-Amino-5-chloropyridin-2-ol hydrochloride is an organic compound with the CAS n...

1261906-29-93-Amino-5-chloropyri...
Compound Q&A

What precautions should be taken when handling 6,7-Difluoro-2,3-dihydro-4H-chromen-4-one (CAS: 1092349-93-3)?

When handling 6,7-Difluoro-2,3-dihydro-4H-chromen-4-one, it is essential to wear...

1092349-93-36,7-Difluoro-2,3-dih...

Source Journal

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
Self-citation Rate: 10.3%
Articles per Year: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

Recommended Compounds

Recommended Suppliers

Disclaimer
This page provides academic journal information for reference and research purposes only. We are not affiliated with any journal publishers and do not handle publication submissions. For publication-related inquiries, please contact the respective journal publishers directly.
If you notice any inaccuracies in the information displayed, please contact us at support@chemtradehub.com. We will promptly review and address your concerns.