Pseudo Jahn–Teller origin of cis–trans and other conformational changes. The role of double bonds

Literature Information

Publication Date 2011-01-17
DOI 10.1039/C0CP00900H
Impact Factor 3.676
Authors

Pablo Garcia-Fernandez, Yang Liu, Isaac B. Bersuker, James E. Boggs


View Original

Abstract

Based on the pseudo Jahn–Teller effect (PJTE) theory, an approach is developed to rationalize and predict the conformations and conformational changes in molecular systems with a common pattern, a double bond. It is shown that starting with the high-symmetry geometry of the environment (in many cases D2d), the double bond descends from an e2 electronic configuration (e is a twofold degenerate MO) which produces a variety of PJT distortions, the main of which is the rotational (b1) transformation D2d → D2h accompanied by the formation of the double bond. Further PJT interactions with higher energy E-states may trigger additional distortions which in D2h symmetry are classified as in-plane (ei) cis and trans, and out-of-plane (eo) chair and boat. The realization of these conformations depends on the positions of the excited E-states and the PJTE parameter values. The two emerging PJTE problems, (3A2 + 3E1 + 3E2) ⊗ (ei + eo) and (1A1 + 1B1 + 1B2 + 1E1 + 1E2) ⊗ (b1 + ei + eo), are formulated in the matrix form and provide a general picture of the ground and excited adiabatic potential energy surfaces. Following this scheme in combination with ab initio calculations, the possible conformations and conformational transitions are analyzed for several specific systems including (in increasing complexity) N2H2, C2H4, N2(NH2)2 and N2(C6H5)2 (azobenzene). The family of molecular systems with a double bond is vast, but the importance of the PJT approach developed here is also in its general validity as it can be applied to any other systems.

Related Literature

Highly selective R,S-coordination of non racemic (1R,2R)-(1,2-dialkyl)-1,2-diamine cyclohexane derivatives to palladium dichloride

Esfandiar Rafii, Benjamin Dassonneville, Andreas Heumann

2007-01-12 Communication

DOI: 10.1039/B613961B

A novel reaction of 7,7,8,8-tetracyanoquinodimethane (TCNQ): charge-transfer chromophores by [2 + 2] cycloaddition with alkynes

Milan Kivala, Corinne Boudon, Jean-Paul Gisselbrecht, Paul Seiler, Maurice Gross, François Diederich

2007-10-24 Communication

DOI: 10.1039/B713683H

Front cover

Cover

DOI: 10.1039/B715693F

Water soluble distyryl-boradiazaindacenes as efficient photosensitizers for photodynamic therapy

Serdar Atilgan, Zeynep Ekmekci, A. Lale Dogan, Dicle Guc, Engin U. Akkaya

2006-10-06 Communication

DOI: 10.1039/B612347C

Fast, efficient Ru(iv)-catalysed regioselective allylation of indoles using allyl alcohol (without additives) under mild conditions

Alexey B. Zaitsev, Stefan Gruber, Paul S. Pregosin

2007-10-15 Communication

DOI: 10.1039/B710763C

Cobalt-catalyzed intermolecular C–H amination with bromamine-T as nitrene source

Jeremiah D. Harden, Joshua V. Ruppel, Guang-Yao Gao, X. Peter Zhang

2007-09-03 Communication

DOI: 10.1039/B710677G

Synthesis of Cp*CH2PPh2 and its use as a ligand for the nickel-catalysed cross-coupling reaction of alkyl halides with aryl Grignard reagents

Minoru Uemura, Hideki Yorimitsu, Koichiro Oshima

2006-09-28 Communication

DOI: 10.1039/B612173J

Characterizing the structure and dynamics of folded oligomers: Pulsed ESR studies of peptoid helices

Aaron T. Fafarman, Peter P. Borbat, Jack H. Freed, Kent Kirshenbaum

2006-12-07 Communication

DOI: 10.1039/B612198E

Back matter

Front/Back Matter

DOI: 10.1039/B716310J

You might also like

Compound Q&A

How is Ethyl 4-chlorothieno[2,3-b]pyridine-5-carboxylate (CAS: 59713-58-5) typically synthesized?

Ethyl 4-chlorothieno[2,3-b]pyridine-5-carboxylate (CAS: 59713-58-5) can be synth...

59713-58-5Ethyl 4-chlorothieno...
Compound Q&A

What regulatory guidelines apply to 5-Methyl-1H-indole-3-carbaldehyde (CAS: 52562-50-2)?

5-Methyl-1H-indole-3-carbaldehyde (CAS: 52562-50-2) is subject to various regula...

52562-50-25-Methyl-1H-indole-3...
Compound Q&A

What are the physical and chemical properties of (1,3-Dimethyl-2,4-dioxo-1,2,3,4-tetrahydro-5-pyrimidinyl)boronic acid (CAS: 223418-73-3)?

(1,3-Dimethyl-2,4-dioxo-1,2,3,4-tetrahydro-5-pyrimidinyl)boronic acid is a white...

223418-73-3(1,3-Dimethyl-2,4-di...
Compound Q&A

How should waste containing Sulfocostunolide A (CAS: 1016983-51-9) be handled?

Waste containing Sulfocostunolide A (CAS: 1016983-51-9) should be handled with c...

1016983-51-9Sulfocostunolide A
Compound Q&A

What precautions should be taken when handling Murraxocin (CAS: 88478-44-8)?

When handling Murraxocin (CAS: 88478-44-8), ensure proper personal protective eq...

88478-44-8Murraxocin
Compound Q&A

What are the physical and chemical properties of Formvar (CAS: 63148-64-1)?

Formvar (CAS: 63148-64-1) is an alkyd resin characterized by a high molecular we...

63148-64-1Formvar(R)
Compound Q&A

Is (S)-4-benzyl-2-((benzyloxy)methyl)morpholine (CAS: 205242-66-6) safe?

(S)-4-benzyl-2-((benzyloxy)methyl)morpholine is generally safe when handled with...

205242-66-6(S)-4-benzyl-2-((ben...
Compound Q&A

What industries use Methyl 1-(5-bromo-2-pyrimidinyl)cyclopropanecarboxylate (CAS: 1447607-69-3)?

Methyl 1-(5-bromo-2-pyrimidinyl)cyclopropanecarboxylate (CAS: 1447607-69-3) is p...

1447607-69-3Methyl 1-(5-bromo-2-...
Compound Q&A

Is 2-Methyl-1-phenyl-1-propanamine hydrochloride (CAS: 24290-47-9) safe?

2-Methyl-1-phenyl-1-propanamine hydrochloride (CAS: 24290-47-9) is generally con...

24290-47-92-Methyl-1-phenyl-1-...
Compound Q&A

How is 3-(4-Bromophenyl)-2-methylpropanoic acid (CAS: 66735-01-1) typically synthesized?

3-(4-Bromophenyl)-2-methylpropanoic acid is synthesized through a multi-step pro...

66735-01-13-(4-Bromophenyl)-2-...

Source Journal

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
Self-citation Rate: 10.3%
Articles per Year: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

Recommended Compounds

Recommended Suppliers

Disclaimer
This page provides academic journal information for reference and research purposes only. We are not affiliated with any journal publishers and do not handle publication submissions. For publication-related inquiries, please contact the respective journal publishers directly.
If you notice any inaccuracies in the information displayed, please contact us at support@chemtradehub.com. We will promptly review and address your concerns.