The chalcogen bond: can it be formed by oxygen?
Literature Information
Helder M. Marques, Preston J. MacDougall
Several recent studies have shown that chalcogen bonds originate from the σ-holes localized on the electron-deficient surface of the Group 16 atoms (sulfur, selenium and tellurium) in molecules; however, the oxygen atom in molecules does not appear to form such a bond. In this study, we have considered oxygen difluoride (OF2) as a prototypical Lewis acid, and 11 Lewis bases as partner interacting species (CH3F, CH3Cl, CH3Br, H2CO, HFCO, HF, SO, CH3CN, PN, HSCN and HCN). Their complexes are examined using DFT-M06-2X and ab initio first-principles calculations at the MP2 level of theory, in conjunction with Dunning's all-electron correlated basis set aug-cc-pVTZ. The results that emerge from the equilibrium geometries, molecular electrostatic surface potential, second order natural bond orbital, quantum theory of atoms in molecules, reduced density gradient and independent gradient model noncovalent analyses tools, as well as from binding energy calculations, demonstrate that oxygen is indeed capable of forming a chalcogen bond. We show that the σ-holes on O along the F–O bond extensions in OF2 are positive, and can readily participate in chalcogen bonding (and other secondary interactions) with Lewis bases, thus providing stability to the geometries of all the 12 binary complexes examined. Finally, we demonstrate that without invoking charge density topologies the often used electrostatic surface potential model is certainly inadequate for the exploration of the noncovalent topology of bonding interactions in the majority of the dimers examined.
Related Literature
Nitroxide mediated controlled synthesis of glycidyl methacrylate-rich copolymers enabled by SG1-based alkoxyamines bearing succinimidyl ester groups
Ali Moayeri, Benoit Lessard, Milan Maric
DOI: 10.1039/C1PY00190F
Aliphatic polyketone obtained by cationic polymerization of ethylketene
Najib Hayki, Nicolas Desilles, Fabrice Burel
DOI: 10.1039/C1PY00199J
Fluorescent carbazole dendrimers for the detection of explosives
Guoqiang Tang, Simon S. Y. Chen, Paul E. Shaw, Katalin Hegedus, Xin Wang, Paul L. Burn, Paul Meredith
DOI: 10.1039/C1PY00222H
Synthetic methodology effect on the microstructure and thermal properties of poly(n-butyl acrylate-co-methyl methacrylate) synthesized by nitroxide mediated polymerization
Adeline Issoulie, Abdel Khoukh, Ahmed Benaboura, Maud Save, Christophe Derail, Laurent Billon
DOI: 10.1039/C1PY00066G
Facile synthesis of agarose-l-phenylalanine ester hydrogels
Gaurav K. Mehta, Stalin Kondaveeti, A. K. Siddhanta
DOI: 10.1039/C1PY00250C
Synthesis and photovoltaic properties of narrow band gap copolymers of dithieno[3,2-b:2′,3′-d]thiophene and diketopyrrolopyrrole
Abasaheb V. Patil, Woo-Hyung Lee, Kyuri Kim, Hanok Park, In Nam Kang, Soo-Hyoung Lee
DOI: 10.1039/C1PY00274K
Peptide-based lipid mimetics with tunable core properties viathiol–alkyne chemistry
Jacob G. Ray, Jack T. Ly, Daniel A. Savin
DOI: 10.1039/C1PY00003A
Facile immobilization of enzymes on electrospun poly(styrene-alt-maleic anhydride) nanofibres
William J. Cloete, Craig Adriaanse, Pieter Swart, Bert Klumperman
DOI: 10.1039/C1PY00069A
DFT investigations on the ring-opening polymerization of cyclic carbonates catalyzed by zinc-{β-diiminate} complexes
Iker del Rosal, Pierre Brignou, Sophie M. Guillaume, Jean-François Carpentier, Laurent Maron
DOI: 10.1039/C1PY00309G
Reversible cross-linking of hydrophilic dynamic covalent polymers with radically exchangeable alkoxyamines in aqueous media
Jing Su, Yoshifumi Amamoto, Masamichi Nishihara
DOI: 10.1039/C1PY00176K
You might also like
What precautions should be taken when handling 2-Methyl-2-propanyl 5-amino-2-thiophenecarboxylate (CAS: 1498311-57-1)?
When handling 2-Methyl-2-propanyl 5-amino-2-thiophenecarboxylate (CAS: 1498311-5...
What are the physical and chemical properties of 5-Bromo-1,2-dichloro-3-fluorobenzene (CAS: 1000572-93-9)?
5-Bromo-1,2-dichloro-3-fluorobenzene (CAS: 1000572-93-9) is a crystalline solid ...
How should (2R)-2-Amino-2-(4-bromophenyl)ethanol (CAS: 354153-64-3) be stored?
(2R)-2-Amino-2-(4-bromophenyl)ethanol (CAS: 354153-64-3) should be stored in a c...
What regulatory guidelines apply to Methyl 4-(aminomethyl)tetrahydro-2H-pyran-4-carboxylate hydrochloride (CAS: 362707-24-2)?
Methyl 4-(aminomethyl)tetrahydro-2H-pyran-4-carboxylate hydrochloride (CAS: 3627...
What are the main uses of 1,4-dimethyl-1H-pyrazole-5-sulfonyl chloride (CAS: 1174834-52-6)?
1,4-Dimethyl-1H-pyrazole-5-sulfonyl chloride is primarily used as an intermediat...
Is Dinaphtho[1,2-b:2',1'-d]furan (CAS: 239-69-0) safe?
Dinaphtho[1,2-b:2',1'-d]furan is generally safe when handled with appropriate pe...
What is the market or research trend for 7-Methyl-7,9-dihydro-1H-purine-2,6,8(3H)-trione (CAS: 612-37-3)?
The market for 7-Methyl-7,9-dihydro-1H-purine-2,6,8(3H)-trione (CAS: 612-37-3) i...
What are the physical and chemical properties of 2-(4-Chlorophenyl)malonaldehyde (CAS: 205676-17-1)?
2-(4-Chlorophenyl)malonaldehyde (CAS: 205676-17-1) is a colorless or light yello...
How is 2-Methylchrysene (CAS: 3351-32-4) typically synthesized?
2-Methylchrysene (CAS: 3351-32-4) is typically synthesized via the reaction of c...
Is N-(6-aminopyrimidin-4-yl)acetamide (CAS: 89533-23-3) safe?
N-(6-aminopyrimidin-4-yl)acetamide (CAS: 89533-23-3) is generally considered saf...
Source Journal
Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.










![2-[2-(2-Methoxyethoxy)ethoxy]-2-methylpropane structure 2-[2-(2-Methoxyethoxy)ethoxy]-2-methylpropane structure](https://static.chemtradehub.com/structs/527/52788-79-1-71c1.webp)



![1-{[5-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)-2-thienyl]methyl}piperidine structure 1-{[5-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)-2-thienyl]methyl}piperidine structure](https://static.chemtradehub.com/structs/121/1218790-44-3-baef.webp)