Interaction of organic compounds with chondritic silicate surfaces. Atomistic insights from quantum chemical periodic simulations
Literature Information
Albert Rimola, Josep M. Trigo-Rodríguez, Zita Martins
The interaction of 14 different probe organic molecules with the crystalline (010) forsterite Mg2SiO4 surface has been studied at quantum chemical level by means of B3LYP-D2* periodic simulations. The probe molecules are representatives of the class of soluble organic compounds found in carbonaceous meteorites, namely: aliphatic and aromatic hydrocarbons, alcohols, carbonyl compounds, amines, amides, nitrogen heterocycles, carboxylic and hydroxycarboxylic acids, sulfonic and phosphonic acids, amino acids, and carbohydrates. With the exception of the aliphatic and aromatic hydrocarbons, the interaction takes place mainly between the O and N electron donor atoms of the molecules and the outermost Mg surface cations, and/or by hydrogen bonds of H atoms of the molecules with O surface atoms. Dispersion also contributes to the final interaction energies. Each surface/molecule complex has also been characterized by computing its harmonic vibrational spectrum, in which the most significant frequency perturbations caused by the surface interaction are described. With the calculated interaction energies, a trend of the intrinsic affinity of the probe molecules with the silicate surface has been obtained. However, this affinity scale does not correlate with the experimental abundances of the class of compounds found in the Murchison meteorite. A brief discussion of this lack of correlation and the factors that can help us to understand the abundances is provided.
Recommended Journals

Russian Journal of Organic Chemistry

Chemistry Education Research and Practice

Journal of Saudi Chemical Society

Current Opinion in Colloid & Interface Science

Russian Journal of Coordination Chemistry

Acta Materialia

Russian Journal of Bioorganic Chemistry

New Journal of Chemistry

Nature Medicine

Chemical Communications
Related Literature
A DNA tetrahedral nanomaterial-based dual-signal ratiometric electrochemical aptasensor for the detection of ochratoxin A in corn kernel samples
Yu-Long Li, Fa-Ting Xie, Cao Yao, Gui-Qun Zhang, Yan Guan, Yun-Hui Yang, Jian-Mei Yang, Rong Hu
DOI: 10.1039/D2AN00934J
Consensus multivariate methods in gas chromatography mass spectrometry and denaturing gradient gel electrophoresis: MHC-congenic and other strains of mice can be classified according to the profiles of volatiles and microflora in their scent-marks
Simeone Zomer, Sarah J. Dixon, Yun Xu, Susanne P. Jensen, Huitu Wang, Clare V. Lanyon, Anthony G. O'Donnell, Anthony S. Clare, L. Morris Gosling, Dustin J. Penn, Richard G. Brereton
DOI: 10.1039/B807061J
Dual-action gallium-flavonoid compounds for combating Pseudomonas aeruginosa infection
Bingjie Han, Yu Guo, Richard Y T Kao, Hongyan Li, Hongzhe Sun, Wei Xia
DOI: 10.1039/D3CB00033H
Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand
Yuliya Dantsu, Ying Zhang, Wen Zhang
DOI: 10.1039/D3CB00137G
The 2′-hydroxy group of flavin mononucleotide influences the catalytic function and promiscuity of the flavoprotein iodotyrosine dehalogenase
Anton Kozyryev, Petrina A. Boucher, Carla M. Quiñones-Jurgensen, Steven E. Rokita
DOI: 10.1039/D3CB00094J
Molecular dynamics modelling of the interaction of a synthetic zinc-finger miniprotein with DNA
Soraya Learte-Aymamí, José L. Mascareñas
DOI: 10.1039/D3CB00053B
Optical leaky waveguide biosensors for the detection of organophosphorus pesticides
M. Zourob, A. Simonian, J. Wild, S. Mohr, Xudong Fan, I. Abdulhalim, N. J. Goddard
DOI: 10.1039/B612871H
Promoters vs. telomeres: AP-endonuclease 1 interactions with abasic sites in G-quadruplex folds depend on topology
Shereen A. Howpay Manage, Judy Zhu, Aaron M. Fleming, Cynthia J. Burrows
DOI: 10.1039/D2CB00233G
Transition metal ions and neurotransmitters: coordination chemistry and implications for neurodegeneration
Jeasang Yoo, Jiyeon Han, Mi Hee Lim
DOI: 10.1039/D3CB00052D
Development of ultra-high affinity bivalent ligands targeting the polo-like kinase 1‡
David Hymel, Buyong Ma, Hirokazu Tamamura, Ruth Nussinov, Terrence R. Burke, Jr.
DOI: 10.1039/D2CB00153E
You might also like
What is Ethyl 3-cyclohexylpropanoate (CAS: 10094-36-7)?
Ethyl 3-cyclohexylpropanoate is a clear, colorless to light yellow liquid with a...
How should waste containing 2-(Hydroxymethyl)-5-(methoxycarbonyl)-6-methyl-4-(2-nitrophenyl)nicotinic acid (CAS: 34783-31-8) be handled?
Waste containing 2-(Hydroxymethyl)-5-(methoxycarbonyl)-6-methyl-4-(2-nitrophenyl...
How should waste containing 2,4,6-Tris(pentafluoroethyl)-1,3,5-triazine (CAS: 858-46-8) be handled?
Waste containing 2,4,6-Tris(pentafluoroethyl)-1,3,5-triazine (CAS: 858-46-8) sho...
What precautions should be taken when handling Chloroac-nle-oh (CAS: 56787-36-1)?
When handling Chloroac-nle-oh (CAS: 56787-36-1), it is essential to wear appropr...
What industries use Ethyl 6-phenylimidazo[2,1-b][1,3]thiazole-3-carboxylate (CAS: 752244-05-6)?
Ethyl 6-phenylimidazo[2,1-b][1,3]thiazole-3-carboxylate is primarily used in the...
Are there alternatives to alpha-(2-Bromophenyl)benzylamine (CAS: 55095-15-3) in synthesis?
Alternatives to alpha-(2-Bromophenyl)benzylamine (CAS: 55095-15-3) in synthesis ...
How should waste containing 2-Chloro-5-methoxypyridine (CAS: 139585-48-1) be handled?
Waste containing 2-Chloro-5-methoxypyridine (CAS: 139585-48-1) should be managed...
What industries use 1-(4-Methoxyphenyl)-2,5-dimethyl-1H-pyrrole (CAS: 5044-27-9)?
1-(4-Methoxyphenyl)-2,5-dimethyl-1H-pyrrole (CAS: 5044-27-9) is used in various ...
Are there alternatives to 3-Bromo-5-(N-Boc)aminomethylisoxazole (CAS: 903131-45-3) in synthesis?
There are alternative reagents and compounds that can be used in the synthesis o...
What is Tungsten(IV) oxide (CAS: 12036-22-5)?
Tungsten(IV) oxide, also known as tungsten dioxide, is a chemical compound with ...
Source Journal
Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.



![Bis[(1,2,3,4,5-eta)-1-(diphenylphosphino)cyclopentadienyl]iron structure Bis[(1,2,3,4,5-eta)-1-(diphenylphosphino)cyclopentadienyl]iron structure](https://static.chemtradehub.com/structs/121/12150-46-8-ecd2.webp)
