SIproc: an open-source biomedical data processing platform for large hyperspectral images
Literature Information
Sebastian Berisha, Shengyuan Chang, Sam Saki, Davar Daeinejad, Ziqi He, Rupali Mankar, David Mayerich
There has recently been significant interest within the vibrational spectroscopy community to apply quantitative spectroscopic imaging techniques to histology and clinical diagnosis. However, many of the proposed methods require collecting spectroscopic images that have a similar region size and resolution to the corresponding histological images. Since spectroscopic images contain significantly more spectral samples than traditional histology, the resulting data sets can approach hundreds of gigabytes to terabytes in size. This makes them difficult to store and process, and the tools available to researchers for handling large spectroscopic data sets are limited. Fundamental mathematical tools, such as MATLAB, Octave, and SciPy, are extremely powerful but require that the data be stored in fast memory. This memory limitation becomes impractical for even modestly sized histological images, which can be hundreds of gigabytes in size. In this paper, we propose an open-source toolkit designed to perform out-of-core processing of hyperspectral images. By taking advantage of graphical processing unit (GPU) computing combined with adaptive data streaming, our software alleviates common workstation memory limitations while achieving better performance than existing applications.
Related Literature
In situ fluorescence and electrochemical monitoring of a photosynthetic microbial fuel cell
Alister E. Inglesby, Kamran Yunus, Adrian C. Fisher
DOI: 10.1039/C3CP51076J
Electron tunneling from electronically excited states of isolated bisdisulizole-derived trianion chromophores following UV absorption
Marc-Oliver Winghart, Michael Kühn, Andreas-Neil Unterreiner, Thomas J. A. Wolf, Phuong D. Dau, Hong-Tao Liu, Dao-Ling Huang, Lai-Sheng Wang
DOI: 10.1039/C3CP50497B
Small-angle water reorientations in KOH doped hexagonal ice and clathrate hydrates
B. Geil
DOI: 10.1039/C3CP00139C
Characterization of strain recovery and “self-healing” in a self-assembled metallo-gel
Pierre Terech, Minhao Yan, Manuel Maréchal, Guy Royal, Jose Galvez, Sabareesh K. P. Velu
DOI: 10.1039/C3CP50671A
The effect of size on the optical properties of guanine nanostructures: a femtosecond to nanosecond study
Ying Hua, Pascale Changenet-Barret, Thomas Gustavsson, Dimitra Markovitsi
DOI: 10.1039/C3CP00060E
Ab initio simulations of scanning-tunneling-microscope images with embedding techniques and application to C58-dimers on Au(111)
Alexei Bagrets
DOI: 10.1039/C3CP44286A
Benchmarks for 0–0 transitions of aromatic organic molecules: DFT/B3LYP, ADC(2), CC2, SOS-CC2 and SCS-CC2 compared to high-resolution gas-phase data
Nina O. C. Winter, Nora K. Graf, Samuel Leutwyler, Christof Hättig
DOI: 10.1039/C2CP42694C
Investigation of the nanomechanical properties of β-Si3N4nanowires under three-point bending via molecular dynamics simulation
Xuefeng Lu, Hongjie Wang, Meng Chen, Lei Fan, Chao Wang, Shuhai Jia
DOI: 10.1039/C3CP50372K
Low-lying excited-states of 5-benzyluracil
Marco Micciarelli, Carlo Altucci, Bartolomeo Della Ventura, Raffaele Velotta, Valer Toşa, Adán B. Gónzalez Pérez, Martin Pérez Rodríguez, Ángel R. de Lera, Attila Bende
DOI: 10.1039/C3CP50343G
You might also like
What is the market or research trend for N-(4-Methoxybenzyl)-2-pyridinamine (CAS: 52818-63-0)?
N-(4-Methoxybenzyl)-2-pyridinamine (CAS: 52818-63-0) is increasingly being used ...
What precautions should be taken when handling Ethyl 4-(2-chlorophenyl)-1,3-thiazole-2-carboxylate (CAS: 1050507-06-6)?
When handling Ethyl 4-(2-chlorophenyl)-1,3-thiazole-2-carboxylate, appropriate p...
What regulatory guidelines apply to diethyldiselane (CAS: 628-39-7)?
Diethyldiselane (CAS: 628-39-7) is classified under the Globally Harmonized Syst...
What is the market or research trend for oxocopper (CAS: 12053-18-8)?
The market for oxocopper (CAS: 12053-18-8) is primarily driven by its use in cat...
What is the market or research trend for 5-{[(2-Methyl-2-propanyl)oxy]carbonyl}-5-azaspiro[2.4]heptane-7-carboxylic acid?
The market for 5-{[(2-Methyl-2-propanyl)oxy]carbonyl}-5-azaspiro[2.4]heptane-7-c...
What is 2-(1-Pyrrolidinyl)-4-pyridinamine (CAS: 35981-63-6)?
2-(1-Pyrrolidinyl)-4-pyridinamine is a chemical compound with the CAS number 359...
What are the physical and chemical properties of 2-(3-Pyridinyl)-1-azabicyclo[2.2.2]octane (CAS: 91556-75-1)?
2-(3-Pyridinyl)-1-azabicyclo[2.2.2]octane (CAS: 91556-75-1) is a crystalline sol...
How is (S)-Alpha-allyl-proline hydrochloride (CAS: 129704-91-2) typically synthesized?
(S)-Alpha-allyl-proline hydrochloride is usually synthesized via a Wittig reacti...
What is 3-Methyl-1,2-oxazole-5-carboxylic acid (CAS: 4857-42-5)?
3-Methyl-1,2-oxazole-5-carboxylic acid (CAS: 4857-42-5) is an organic compound w...
How is Lys-SMCC-DM1 (CAS: 1281816-04-3) typically synthesized?
Lys-SMCC-DM1 is synthesized via a multi-step process involving the coupling of S...
Source Journal
Analyst

Analyst publishes analytical and bioanalytical research that reports premier fundamental discoveries and inventions, and the applications of those discoveries, unconfined by traditional discipline barriers.











![1-{3-[4-Amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-1-piperidinyl}-2,3-dihydroxy-1-propanone structure 1-{3-[4-Amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-1-piperidinyl}-2,3-dihydroxy-1-propanone structure](https://static.chemtradehub.com/structs/122/1226872-27-0-e037.webp)


![1,10-bis(3,5-dimethylphenyl)-12-hydroxy-4,5,6,7-tetrahydroiindeno[7,1-de:1',7'-fg][1,3,2]dioxaphosphocine 12-oxide structure 1,10-bis(3,5-dimethylphenyl)-12-hydroxy-4,5,6,7-tetrahydroiindeno[7,1-de:1',7'-fg][1,3,2]dioxaphosphocine 12-oxide structure](https://static.chemtradehub.com/structs/141/1412439-82-7-b9a9.webp)