Using coarse-grained molecular dynamics to rationalize biomolecule solubilization mechanisms in ionic liquid-based colloidal systems
Literature Information
Henrique Bastos, Ricardo Bento, Nicolas Schaeffer, João A. P. Coutinho, Germán Pérez-Sánchez
Solubilizing agents are widely used to extract poorly soluble compounds from biological matrices. Aqueous solutions of surfactants and hydrotropes are commonly used as solubilizers, however, the underlying mechanism that determines their action is still roughly understood. Among these, ionic liquids (IL) are often used not only for solubilization of a target compound but in liquid–liquid extraction processes. Molecular dynamics simulations can shed light into this issue by providing a microscopic insight of the interactions between solute and solubilising agents. In this work, a new coarse-grained (CG) model was developed under the MARTINI framework for gallic acid (GA) while the CG models of three quaternary ammonium ionic liquids and salts (QAILS) were obtained from literature. Three QAILS were selected bearing in mind their potential solubilising mechanisms: trimethyl-tetradecylammonium chloride ([N1,1,1,14]Cl) as a surfactant, tetrabutylammonium chloride ([N4,4,4,4]Cl) as a hydrotrope, and tributyl-tetradecylammonium chloride ([N4,4,4,14]Cl) as a system combining the characteristics of the other compounds. Throughout this hydrotrope-to-surfactant spectrum and considering the most prevalent GA species across the pH range, the solvation of GA at two concentration levels in aqueous QAILS solutions were studied and discussed. The results of this study indicate that dispersive interactions between the QAILS and GA are generally the driving force in the GA solubilization. However, electrostatic interactions play an increasingly significant role as the GA becomes deprotonated, affecting their placement within the micelle and ultimately the solvation mechanism. The hydrotropic mechanism seen in [N4,4,4,4]Cl corroborates recent models based on the formation of a hydrotrope-solute aggregates driven by dispersive forces. This work contributes to the application of a transferable approach to partition and solubilization studies using molecular dynamics, which could complement experimental assays and quickly screen molecular candidates for these processes.
Recommended Journals
Related Literature
Polyester-graft-phosphorylcholine prepared by ring-opening polymerization and click chemistry
Beth M. Cooper, Delphine Chan-Seng, Debasis Samanta, Xiongfei Zhang, Sangram Parelkar, Todd Emrick
DOI: 10.1039/B817600K
Self-assembling optically pure Fe(A–B)3 chelates
Suzanne E. Howson, Laura E. N. Allan, Nikola P. Chmel, Guy J. Clarkson, Remy van Gorkum, Peter Scott
DOI: 10.1039/B821573A
Dye displacement assay for saccharide detection with boronate hydrogels‡
Winson M. J. Ma, Marta P. Pereira Morais, François D’Hooge, Jean M. H. van den Elsen, Jonathan P. L. Cox, Tony D. James, John S. Fossey
DOI: 10.1039/B814379J
Synthesis of a pyridine-fused porphyrinoid: oxopyridochlorin
Sumito Tokuji, Yuji Takahashi, Hideyuki Shinmori, Hiroshi Shinokubo, Atsuhiro Osuka
DOI: 10.1039/B819284G
Heteropolyacid-assisted fabrication of carbon nanostructures under ambient conditions
Enbo Wang
DOI: 10.1039/B812573B
Linking high anisotropy Dy3 triangles to create a Dy6 single-molecule magnet
Bashir Hussain, Didier Savard, Tara J. Burchell, Wolfgang Wernsdorfer, Muralee Murugesu
DOI: 10.1039/B818295G
3-Mercaptopropionic acid-mediated synthesis of peptide and protein thioesters
Jaskiranjit Kang, Jonathan P. Richardson, Derek Macmillan
DOI: 10.1039/B815888F
Chemoenzymatic syntheses of carbasugar analogues of nucleoside diphosphate sugars: UDP-carba-Gal, UDP-carba-GlcNAc, UDP-carba-Glc, and GDP-carba-Man‡
Kyung-Chang Seo, Young-Geol Kwon, Dae-Hee Kim, In-Sook Jang, Jin-Won Cho, Sung-Kee Chung
DOI: 10.1039/B821058F
One-pot noncovalent method to functionalize multi-walled carbon nanotubes using cyclomatrix-type polyphosphazenes
Jianwei Fu, Xiaobin Huang, Yawen Huang, Jiawei Zhang, Xiaozhen Tang
DOI: 10.1039/B818071G
Switching the photo-induced energy and electron-transfer processes in BODIPY–phthalocyanine conjugates
Jian-Yong Liu, Eugeny A. Ermilov, Beate Röder, Dennis K. P. Ng
DOI: 10.1039/B821630D
You might also like
What are the main uses of (5-Sulfamoyl-3-pyridinyl)boronic acid (CAS: 951233-61-7)?
(5-Sulfamoyl-3-pyridinyl)boronic acid is primarily used in chemical synthesis, p...
How is Benzyl 2-methyl-2-(methylsulfonyl)-4-pentenoate (CAS: 1942858-50-5) typically synthesized?
Benzyl 2-methyl-2-(methylsulfonyl)-4-pentenoate is typically synthesized via est...
What precautions should be taken when handling 8-Fluoroquinolin-6-ol (CAS: 209353-22-0)?
When handling 8-Fluoroquinolin-6-ol (CAS: 209353-22-0), it is important to use p...
What are the physical and chemical properties of 1,3-Dibromo-5-(2-methyl-2-propanyl)benzene (CAS: 129316-09-2)?
1,3-Dibromo-5-(2-methyl-2-propanyl)benzene (CAS: 129316-09-2) is a crystalline c...
What industries use Ethyl 7-chloro-4-oxo-1-(1,3-thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-carboxylate (CAS: 174726-87-5)?
Ethyl 7-chloro-4-oxo-1-(1,3-thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-carbox...
What precautions should be taken when handling Delta-7-Avenasterol (CAS: 23290-26-8)?
When handling Delta-7-Avenasterol (CAS: 23290-26-8), it is important to wear app...
What precautions should be taken when handling N-({(5R)-3-[3-Fluoro-4-(4-morpholinyl)phenyl]-2-oxo-1,3-oxazolidin-5-yl}methyl)acetamide (CAS: 872992-20-6)?
Proper handling involves the use of personal protective equipment such as gloves...
What precautions should be taken when handling 2-Methyl-2-proanyl 4-[(2-aminophenyl)amino]-1-piperidinecarboxylate (CAS: 79099-00-6)?
When handling 2-Methyl-2-proanyl 4-[(2-aminophenyl)amino]-1-piperidinecarboxylat...
What is N-Methyl-4-chlorobenzylamine hydrochloride (CAS: 65542-24-7)?
N-Methyl-4-chlorobenzylamine hydrochloride (CAS: 65542-24-7) is a organic compou...
Is [2-(Dodecyloxy)ethoxy]acetic acid (CAS: 27306-90-7) safe?
[2-(Dodecyloxy)ethoxy]acetic acid (CAS: 27306-90-7) is generally considered safe...
Source Journal
Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.











![2-Azaspiro[4.5]decane-3,8-dione structure 2-Azaspiro[4.5]decane-3,8-dione structure](https://static.chemtradehub.com/structs/914/914780-96-4-e94b.webp)

![(4-Methyl-1H-benzo[d]imidazol-2-yl)methanamine structure (4-Methyl-1H-benzo[d]imidazol-2-yl)methanamine structure](https://static.chemtradehub.com/structs/933/933756-31-1-7b0b.webp)
