Acceleration of the Z to Ephotoisomerization of penta-2,4-dieniminium by hydrogen out-of-plane motion: theoretical study on a model system of retinal protonated Schiff base

Literature Information

Publication Date 2009-06-09
DOI 10.1039/B900882A
Impact Factor 3.676
Authors

Masato Sumita, Mikhail N. Ryazantsev, Kazuya Saito


View Original

Abstract

We report the result of comparison between two reaction coordinates [on the potential energy surface of the first excited state (S1)] produced by CASSCF and these energies recalculated by MRMP2 in the Z to Ephotoisomerization of penta-2,4-dieniminium (PDI) as the minimal model of the retinal protonated Schiff base (RPSB). One coordinate is the S1 state minimum-energy-path (MEP) in mass-weighted coordinates from the S1 vertically excited point, where a strong hydrogen-out-of plane (HOOP) motion is not exhibited. The energy profile of the S1MEP at the MRMP2//CASSCF level shows a barrier for the rotation around the reactive C–C and hits the S1/S0 degeneracy space where the central C–C–C–C dihedral angle is distorted by 65°. The other coordinate is an S1 coordinate obtained by the relaxed scan strategy. The relaxed coordinate along the central C–C–C–C dihedral angle, which we call the HOOP coordinate, shows strong HOOP motion. According to the MRMP2//CASSCF calculation, there is no barrier on the HOOP coordinate. Furthermore, the S1 to S0 transition may be possible without the large skeletal deformation by HOOP motion because the HOOP coordinate encounters the S1/S0 degeneracy space where the central C–C–C–C dihedral angle is distorted by only 40°. Consequently, if PDI is a suitable model molecule for the RPSB as often assumed, the 11-cis to all-transphotoisomerization is predicted to be accelerated by the HOOP motion.

Related Literature

From oxidative degradation to direct oxidation: size regimes in the consecutive reaction of cationic tantalum clusters with dioxygen

J. F. Eckhard, D. Neuwirth, M. Tschurl, U. Heiz

2017-04-04 Paper

DOI: 10.1039/C7CP01293D

Towards improved magnetic fluid hyperthermia: major-loops to diminish variations in local heating

Cristina Munoz-Menendez, Juan M. Ruso, Daniel Baldomir

2017-05-11 Paper

DOI: 10.1039/C7CP01442B

Water-repellent hydrophilic nanogrooves

Yu-Hsuan Weng, I-Fan Hsieh, Yu-Jane Sheng

2017-04-27 Paper

DOI: 10.1039/C7CP01409K

Partnering dispersion corrections with modern parameter-free double-hybrid density functionals

J. C. Sancho-García, É. Brémond, M. Savarese, A. J. Pérez-Jiménez

2017-02-23 Paper

DOI: 10.1039/C7CP00709D

Contents list

Front/Back Matter

DOI: 10.1039/C7CP90121F

Addressing uncertainty in atomistic machine learning

Andrew A. Peterson, Rune Christensen, Alireza Khorshidi

2017-04-18 Perspective

DOI: 10.1039/C7CP00375G

Dielectric functions and critical points of crystalline WS2 ultrathin films with tunable thickness

Da-Hai Li, Hua Zheng, Zi-Yi Wang, Rong-Jun Zhang, Hao Zhang, Yu-Xiang Zheng, Song-You Wang, David Wei Zhang, Liang-Yao Chen

2017-04-12 Paper

DOI: 10.1039/C7CP00660H

Rovibrational spectroscopic constants of the interaction between ammonia and metallo-phthalocyanines: a theoretical protocol for ammonia sensor design

Daniel F. S. Machado, Valter H. Carvalho-Silva, Leonardo G. Paterno, Heibbe Cristhian B. de Oliveira

2017-02-15 Paper

DOI: 10.1039/C6CP07900H

Effect of ion–ligand binding on ion pairing dynamics studied by two-dimensional infrared spectroscopy

YoungAh Kwon, Junho Lee, Sungnam Park

2017-03-24 Paper

DOI: 10.1039/C6CP08852J

You might also like

Compound Q&A

How should waste containing N-Methoxy-N-methyl-1,3-thiazole-5-carboxamide (CAS: 898825-89-3) be handled?

Waste containing N-Methoxy-N-methyl-1,3-thiazole-5-carboxamide (CAS: 898825-89-3...

898825-89-3N-Methoxy-N-methyl-1...
Compound Q&A

How should N-(4-Biphenylyl)dibenzo[b,d]furan-4-amine (CAS: 1318338-47-4) be stored?

N-(4-Biphenylyl)dibenzo[b,d]furan-4-amine should be stored in a tightly sealed c...

1318338-47-4N-(4-Biphenylyl)dibe...
Compound Q&A

What is the market or research trend for 3-Acetamido-5-amino-2,4,6-triiodobenzoic acid (CAS: 1713-07-1)?

The market for 3-Acetamido-5-amino-2,4,6-triiodobenzoic acid (CAS: 1713-07-1) is...

1713-07-13-Acetamido-5-amino-...
Compound Q&A

How should Benzyl 2-O-acetyl-3,4,6-tri-O-benzyl-beta-D-galactopyranoside (CAS: 61820-03-9) be stored?

Benzyl 2-O-acetyl-3,4,6-tri-O-benzyl-beta-D-galactopyranoside (CAS: 61820-03-9) ...

61820-03-9Benzyl 2-O-acetyl-3,...
Compound Q&A

What regulatory guidelines apply to 2-Ethylpiperazine dihydrochloride (CAS: 438050-52-3)?

2-Ethylpiperazine dihydrochloride (CAS: 438050-52-3) is regulated under the Glob...

438050-52-32-Ethylpiperazine di...
Compound Q&A

What regulatory guidelines apply to 1,1'-[1,3-Phenylenebis(methylene)]bis(3-methyl-1H-pyrrole-2,5-dione) (CAS: 119462-56-5)?

1,1'-[1,3-Phenylenebis(methylene)]bis(3-methyl-1H-pyrrole-2,5-dione) (CAS: 11946...

119462-56-51,1'-[1,3-Phenyleneb...
Compound Q&A

Are there alternatives to 5-Fluoro-2-(1-pyrrolidinyl)pyridine (CAS: 1287217-79-1) in synthesis?

Several alternatives can be used in the synthesis of 5-Fluoro-2-(1-pyrrolidinyl)...

1287217-79-15-Fluoro-2-(1-pyrrol...
Compound Q&A

What precautions should be taken when handling 6-Bromoimidazo[1,2-a]pyridin-8-amine (CAS: 676371-00-9)?

When handling 6-Bromoimidazo[1,2-a]pyridin-8-amine, it is important to wear appr...

676371-00-96-Bromoimidazo[1,2-a...
Compound Q&A

Are there alternatives to (2S,4R)-4-(4-Nitrobenzyl)pyrrolidine-2-carboxylic acid hydrochloride (CAS: 1049740-22-8) in synthesis?

Alternatives to (2S,4R)-4-(4-Nitrobenzyl)pyrrolidine-2-carboxylic acid hydrochlo...

1049740-22-8(2S,4R)-4-(4-Nitrobe...

Source Journal

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
Self-citation Rate: 10.3%
Articles per Year: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

Recommended Compounds

Recommended Suppliers

Disclaimer
This page provides academic journal information for reference and research purposes only. We are not affiliated with any journal publishers and do not handle publication submissions. For publication-related inquiries, please contact the respective journal publishers directly.
If you notice any inaccuracies in the information displayed, please contact us at support@chemtradehub.com. We will promptly review and address your concerns.